Protein structure similarity clustering: dynamic treatment of PDB structures facilitates clustering.

نویسندگان

  • Bradley D Charette
  • Richard G Macdonald
  • Stefan Wetzel
  • David B Berkowitz
  • Herbert Waldmann
چکیده

برای دانلود رایگان متن کامل این مقاله و بیش از 32 میلیون مقاله دیگر ابتدا ثبت نام کنید

ثبت نام

اگر عضو سایت هستید لطفا وارد حساب کاربری خود شوید

منابع مشابه

PDB-Ligand: a ligand database based on PDB for the automated and customized classification of ligand-binding structures

PDB-Ligand (http://www.idrtech.com/PDB-Ligand/) is a three-dimensional structure database of small molecular ligands that are bound to larger biomolecules deposited in the Protein Data Bank (PDB). It is also a database tool that allows one to browse, classify, superimpose and visualize these structures. As of May 2004, there are about 4870 types of small molecular ligands, experimentally determ...

متن کامل

ProTarget: automatic prediction of protein structure novelty

ProTarget is a Web-based tool for the automatic prediction of fold novelty. It offers the structural genomics community a method for target selection by providing an online analysis of any new or pre-existing sequence for its relationship to any previously solved three-dimensional structure. ProTarget takes as input an amino acid sequence. Regions of this sequence that exhibit high similarity t...

متن کامل

An improved opposition-based Crow Search Algorithm for Data Clustering

Data clustering is an ideal way of working with a huge amount of data and looking for a structure in the dataset. In other words, clustering is the classification of the same data; the similarity among the data in a cluster is maximum and the similarity among the data in the different clusters is minimal. The innovation of this paper is a clustering method based on the Crow Search Algorithm (CS...

متن کامل

A permissive secondary structure-guided superposition tool for clustering of protein fragments toward protein structure prediction via fragment assembly

MOTIVATION Secondary-Structure Guided Superposition tool (SSGS) is a permissive secondary structure-based algorithm for matching of protein structures and in particular their fragments. The algorithm was developed towards protein structure prediction via fragment assembly. RESULTS In a fragment-based structural prediction scheme, a protein sequence is cut into building blocks (BBs). The BBs a...

متن کامل

A Hybrid Time Series Clustering Method Based on Fuzzy C-Means Algorithm: An Agreement Based Clustering Approach

In recent years, the advancement of information gathering technologies such as GPS and GSM networks have led to huge complex datasets such as time series and trajectories. As a result it is essential to use appropriate methods to analyze the produced large raw datasets. Extracting useful information from large data sets has always been one of the most important challenges in different sciences,...

متن کامل

ذخیره در منابع من


  با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید

عنوان ژورنال:
  • Angewandte Chemie

دوره 45 46  شماره 

صفحات  -

تاریخ انتشار 2006